PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008514-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ZF-HD
Protein Properties Length: 296aa    MW: 32311.6 Da    PI: 8.3397
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008514-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.77.8e-3560117359
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     ++YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre++e
  NNU_008514-RA  60 VITYKECLKNHAASLGGHAVDGCGEFMPSPSATpTDPTSLKCAACGCHRNFHRREPDE 117
                    579*****************************99********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-1861117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-2961115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.6E-3262114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.29563114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.7E-30192258IPR009057Homeodomain-like
SuperFamilySSF466892.51E-19192258IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-25197253IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDLTATAITP NSSRRPQEAD ADTPSPTQPT KLTDHHISKP LSFGNGVLKR HHQNHTPSAV  60
ITYKECLKNH AASLGGHAVD GCGEFMPSPS ATPTDPTSLK CAACGCHRNF HRREPDEGAH  120
TLDYHHQHQQ HTPHQPIVAR CRSPNSASPP PLSSSYYPSA PHMLLALSTG LSGAPENHVN  180
TTAAATTAIV TPNPNGRKRF RTKFSQEQKE KMYAFSERLG WKMQKSDEEV VDEFCNEIGV  240
GKGVLKVWMH NNKHTFGKRD ANGNRSSVDA NENHSHSHHN DNSAHHVATN GSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-221982551875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258352.10.0PREDICTED: zinc-finger homeodomain protein 9-like
TrEMBLF6H5T23e-91F6H5T2_VITVI; Putative uncharacterized protein
STRINGVIT_14s0108g00750.t017e-91(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-62homeobox protein 34